4O5R image
Deposition Date 2013-12-20
Release Date 2014-11-05
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4O5R
Keywords:
Title:
Crystal structure of Alkylhydroperoxide Reductase subunit C from E. coli
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.33 Å
R-Value Free:
0.25
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:AhpC component, subunit of alkylhydroperoxide reductase
Chain IDs:A, B, C, D, E
Chain Length:187
Number of Molecules:5
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli
Acta Crystallogr.,Sect.D 70 2848 2862 (2014)
PMID: 25372677 DOI: 10.1107/S1399004714019233

Abstact

Hydroperoxides are reactive oxygen species (ROS) that are toxic to all cells and must be converted into the corresponding alcohols to alleviate oxidative stress. In Escherichia coli, the enzyme primarily responsible for this reaction is alkylhydroperoxide reductase (AhpR). Here, the crystal structures of both of the subunits of EcAhpR, EcAhpF (57 kDa) and EcAhpC (21 kDa), have been solved. The EcAhpF structures (2.0 and 2.65 Å resolution) reveal an open and elongated conformation, while that of EcAhpC (3.3 Å resolution) forms a decameric ring. Solution X-ray scattering analysis of EcAhpF unravels the flexibility of its N-terminal domain, and its binding to EcAhpC was demonstrated by isothermal titration calorimetry. These studies suggest a novel overall mechanistic model of AhpR as a hydroperoxide scavenger, in which the dimeric, extended AhpF prefers complex formation with the AhpC ring to accelerate the catalytic activity and thus to increase the chance of rescuing the cell from ROS.

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