4NXL image
Deposition Date 2013-12-09
Release Date 2014-07-23
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4NXL
Keywords:
Title:
Dibenzothiophene monooxygenase (DszC) from Rhodococcus erythropolis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DszC
Chain IDs:A, B, C, D
Chain Length:453
Number of Molecules:4
Biological Source:Rhodococcus erythropolis
Primary Citation
Structural insights into the stabilization of active, tetrameric DszC by its C-terminus.
Proteins 82 2733 2743 (2014)
PMID: 24975806 DOI: 10.1002/prot.24638

Abstact

Dibenzothiophene (DBT) is a typical sulfur-containing compound found in fossil fuels. This compound and its derivatives are resistant to the hydrodesulfurization method often used in industry, but they are susceptible to enzymatic desulfurization via the 4S pathway, which is a well-studied biochemical pathway consisting of four enzymes. DBT monooxygenase (DszC) from Rhodococcus erythropolis is involved in the first step of the 4S pathway. We determined the crystal structure of DszC, which reveals that, in contrast to several homologous proteins, the C-terminus (410-417) of DszC participates in the stabilization of the substrate-binding pocket. Analytical ultracentrifugation analysis and enzymatic assays confirmed that the C-terminus is important for the stabilization of the active conformation of the substrate-binding pocket and the tetrameric state. Therefore, the C-terminus of DszC plays a significant role in the catalytic activity of this enzyme.

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Primary Citation of related structures