4NTY image
Deposition Date 2013-12-02
Release Date 2014-02-19
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4NTY
Title:
Cesium sites in the crystal structure of acid-sensing ion channel in complex with snake toxin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.65 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acid-sensing ion channel 1
Gene (Uniprot):ASIC1
Chain IDs:A
Chain Length:450
Number of Molecules:1
Biological Source:Gallus gallus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neurotoxin MitTx-alpha
Chain IDs:B
Chain Length:60
Number of Molecules:1
Biological Source:Micrurus tener tener
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Basic phospholipase A2 homolog Tx-beta
Chain IDs:C
Chain Length:119
Number of Molecules:1
Biological Source:Micrurus tener tener
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA B GLN PYROGLUTAMIC ACID
Primary Citation
X-ray structure of Acid-sensing ion channel 1-snake toxin complex reveals open state of a na(+)-selective channel.
Cell(Cambridge,Mass.) 156 717 729 (2014)
PMID: 24507937 DOI: 10.1016/j.cell.2014.01.011

Abstact

Acid-sensing ion channels (ASICs) detect extracellular protons produced during inflammation or ischemic injury and belong to the superfamily of degenerin/epithelial sodium channels. Here, we determine the cocrystal structure of chicken ASIC1a with MitTx, a pain-inducing toxin from the Texas coral snake, to define the structure of the open state of ASIC1a. In the MitTx-bound open state and in the previously determined low-pH desensitized state, TM2 is a discontinuous α helix in which the Gly-Ala-Ser selectivity filter adopts an extended, belt-like conformation, swapping the cytoplasmic one-third of TM2 with an adjacent subunit. Gly 443 residues of the selectivity filter provide a ring of three carbonyl oxygen atoms with a radius of ∼3.6 Å, presenting an energetic barrier for hydrated ions. The ASIC1a-MitTx complex illuminates the mechanism of MitTx action, defines the structure of the selectivity filter of voltage-independent, sodium-selective ion channels, and captures the open state of an ASIC.

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Primary Citation of related structures
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