4NTD image
Deposition Date 2013-12-02
Release Date 2014-03-05
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4NTD
Keywords:
Title:
Crystal structure of HlmI
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Thioredoxin reductase
Gene (Uniprot):SCLAV_5275
Chain IDs:A
Chain Length:340
Number of Molecules:1
Biological Source:Streptomyces clavuligerus
Primary Citation
Flavoenzyme-Catalyzed Formation of Disulfide Bonds in Natural Products
Angew.Chem.Int.Ed.Engl. 53 2221 2224 (2014)
PMID: 24446392 DOI: 10.1002/anie.201309302

Abstact

Nature provides a rich source of compounds with diverse chemical structures and biological activities, among them, sulfur-containing metabolites from bacteria and fungi. Some of these compounds bear a disulfide moiety that is indispensable for their bioactivity. Specialized oxidoreductases such as GliT, HlmI, and DepH catalyze the formation of this disulfide bridge in the virulence factor gliotoxin, the antibiotic holomycin, and the anticancer drug romidepsin, respectively. We have examined all three enzymes by X-ray crystallography and activity assays. Despite their differently sized substrate binding clefts and hence, their diverse substrate preferences, a unifying reaction mechanism is proposed based on the obtained crystal structures and further supported by mutagenesis experiments.

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Primary Citation of related structures
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