4NPF image
Deposition Date 2013-11-21
Release Date 2014-10-08
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4NPF
Keywords:
Title:
High-resolution structure of two tandem B domains of staphylococcal protein A connected by the conserved linker
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.49 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin G-binding protein A
Gene (Uniprot):spa
Mutagens:W13F, W113F
Chain IDs:A (auth: Y), B (auth: X)
Chain Length:116
Number of Molecules:2
Biological Source:Staphylococcus aureus
Primary Citation
Multiscale conformational heterogeneity in staphylococcal protein a: possible determinant of functional plasticity.
Structure 22 1467 1477 (2014)
PMID: 25295398 DOI: 10.1016/j.str.2014.08.014

Abstact

The Staphylococcus aureus virulence factor staphylococcal protein A (SpA) is a major contributor to bacterial evasion of the host immune system, through high-affinity binding to host proteins such as antibodies. SpA includes five small three-helix-bundle domains (E-D-A-B-C) separated by conserved flexible linkers. Prior attempts to crystallize individual domains in the absence of a binding partner have apparently been unsuccessful. There have also been no previous structures of tandem domains. Here we report the high-resolution crystal structures of a single C domain, and of two B domains connected by the conserved linker. Both structures exhibit extensive multiscale conformational heterogeneity, which required novel modeling protocols. Comparison of domain structures shows that helix1 orientation is especially heterogeneous, coordinated with changes in side chain conformational networks and contacting protein interfaces. This represents the kind of structural plasticity that could enable SpA to bind multiple partners.

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