4NM8 image
Deposition Date 2013-11-14
Release Date 2013-12-25
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4NM8
Title:
Crystal structure of broadly neutralizing antibody CR8043 bound to H3 influenza hemagglutinin
Biological Source:
Expression System(s):
Method Details:
Experimental Method:
Resolution:
4.00 Å
R-Value Free:
0.29
R-Value Work:
0.23
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 Chain
Gene (Uniprot):HA
Chain IDs:A, C, E
Chain Length:323
Number of Molecules:3
Biological Source:Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 Chain
Gene (Uniprot):HA
Chain IDs:B, D, F
Chain Length:176
Number of Molecules:3
Biological Source:Influenza A virus (strain A/Hong Kong/1/1968 H3N2)
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antibody CR8043, Heavy Chain
Chain IDs:H, J (auth: I), L (auth: J)
Chain Length:230
Number of Molecules:3
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Antibody CR8043, Light Chain
Chain IDs:G (auth: L), I (auth: M), K (auth: N)
Chain Length:220
Number of Molecules:3
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN C ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation

Abstact

The discovery and characterization of broadly neutralizing antibodies (bnAbs) against influenza viruses have raised hopes for the development of monoclonal antibody (mAb)-based immunotherapy and the design of universal influenza vaccines. Only one human bnAb (CR8020) specifically recognizing group 2 influenza A viruses has been previously characterized that binds to a highly conserved epitope at the base of the hemagglutinin (HA) stem and has neutralizing activity against H3, H7, and H10 viruses. Here, we report a second group 2 bnAb, CR8043, which was derived from a different germ-line gene encoding a highly divergent amino acid sequence. CR8043 has in vitro neutralizing activity against H3 and H10 viruses and protects mice against challenge with a lethal dose of H3N2 and H7N7 viruses. The crystal structure and EM reconstructions of the CR8043-H3 HA complex revealed that CR8043 binds to a site similar to the CR8020 epitope but uses an alternative angle of approach and a distinct set of interactions. The identification of another antibody against the group 2 stem epitope suggests that this conserved site of vulnerability has great potential for design of therapeutics and vaccines.

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Disease

Primary Citation of related structures
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