4NJE image
Deposition Date 2013-11-09
Release Date 2014-12-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4NJE
Keywords:
Title:
Crystal structure of Pyrococcus furiosus L-asparaginase with ligand
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 65 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-asparaginase
Gene (Uniprot):PF2047
Chain IDs:A
Chain Length:204
Number of Molecules:1
Biological Source:Pyrococcus furiosus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:L-asparaginase
Gene (Uniprot):PF2047
Chain IDs:B
Chain Length:147
Number of Molecules:1
Biological Source:Pyrococcus furiosus
Ligand Molecules
Primary Citation
Structural and functional insights into an archaeal L-asparaginase obtained through the linker-less assembly of constituent domains.
Acta Crystallogr.,Sect.D 70 3187 3197 (2014)
PMID: 25478837 DOI: 10.1107/S1399004714023414

Abstact

Covalent linkers bridging the domains of multidomain proteins are considered to be crucial for assembly and function. In this report, an exception in which the linker of a two-domain dimeric L-asparaginase from Pyrococcus furiosus (PfA) was found to be dispensable is presented. Domains of this enzyme assembled without the linker into a conjoined tetrameric form that exhibited higher activity than the parent enzyme. The global shape and quaternary structure of the conjoined PfA were also similar to the wild-type PfA, as observed by their solution scattering profiles and X-ray crystallographic data. Comparison of the crystal structures of substrate-bound and unbound enzymes revealed an altogether new active-site composition and mechanism of action. Thus, conjoined PfA is presented as a unique enzyme obtained through noncovalent, linker-less assembly of constituent domains that is stable enough to function efficiently at elevated temperatures.

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Primary Citation of related structures