4NIY image
Deposition Date 2013-11-08
Release Date 2014-02-19
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4NIY
Title:
Crystal structure of trypsiligase (K60E/N143H/Y151H/D189K trypsin) complexed to YRH-ecotin (M84Y/M85R/A86H ecotin)
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Escherichia coli (Taxon ID: 83333)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.84 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cationic trypsin
Gene (Uniprot):PRSS1
Mutagens:K60E, N143H, Y151H, D189K
Chain IDs:A, B, C, D
Chain Length:223
Number of Molecules:4
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ecotin
Gene (Uniprot):eco
Mutagens:M84Y, M85R, A86H
Chain IDs:E, F, G, H
Chain Length:142
Number of Molecules:4
Biological Source:Escherichia coli
Primary Citation
N-terminal protein modification by substrate-activated reverse proteolysis.
Angew.Chem.Int.Ed.Engl. 53 3024 3028 (2014)
PMID: 24520050 DOI: 10.1002/anie.201307736

Abstact

Although site-specific incorporation of artificial functionalities into proteins is an important tool in both basic and applied research, it can be a major challenge to protein chemists. Enzymatic protein modification is an attractive goal due to the inherent regio- and stereoselectivity of enzymes, yet their specificity remains a problem. As a result of the intrinsic reversibility of enzymatic reactions, proteinases can in principle catalyze ligation reactions. While this makes them attractive tools for site-specific protein bioconjugation, competing hydrolysis reactions limits their general use. Here we describe the design and application of a highly specific trypsin variant for the selective modification of N-terminal residues of diverse proteins with various reagents. The modification proceeds quantitatively under native (aqueous) conditions. We show that the variant has a disordered zymogen-like activation domain, effectively suppressing the hydrolysis reaction, which is converted to an active conformation in the presence of appropriate substrates.

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Primary Citation of related structures