4NFG image
Deposition Date 2013-10-31
Release Date 2014-09-24
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4NFG
Title:
K13R mutant of horse cytochrome c and yeast cytochrome c peroxidase complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cytochrome c peroxidase, mitochondrial
Gene (Uniprot):CCP1
Chain IDs:A
Chain Length:294
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Cytochrome c
Gene (Uniprot):CYCS
Mutations:K13R
Chain IDs:B
Chain Length:104
Number of Molecules:1
Biological Source:Equus caballus
Primary Citation
Engineering specificity in a dynamic protein complex with a single conserved mutation.
Febs J. 281 4892 4905 (2014)
PMID: 25180929 DOI: 10.1111/febs.13028

Abstact

It has been demonstrated that the complex of yeast cytochrome c (Cc) and cytochrome c peroxidase (CcP) exists as a delicate equilibrium of a specific, active state and the non-specific, dynamic encounter state. An ortholog of yeast Cc, horse Cc, binds CcP but forms a much more dynamic complex, as demonstrated by NMR spectroscopy. A single conservative mutation of lysine 13 to arginine reduces the dynamics and enhances the specificity. The crystal structure of the stereospecific complex resembles the yeast Cc-CcP complex. In contrast, the K13A mutation increases the dynamic nature of the complex with CcP, showing that specificity in a redox protein complex can depend on the interactions of a single side chain in the binding interface.

Legend

Protein

Chemical

Disease

Primary Citation of related structures