4NEN image
Deposition Date 2013-10-29
Release Date 2014-01-15
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4NEN
Keywords:
Title:
An internal ligand-bound, metastable state of a leukocyte integrin, aXb2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Integrin alpha-X
Gene (Uniprot):ITGAX
Mutations:N42D, N368S, N678T, N885S and N920C
Chain IDs:A
Chain Length:1094
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Integrin beta-2
Gene (Uniprot):ITGB2
Mutations:N190D, N232K and V696C
Chain IDs:B
Chain Length:686
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Primary Citation
An internal ligand-bound, metastable state of a leukocyte integrin, alpha X beta 2.
J.Cell Biol. 203 629 642 (2013)
PMID: 24385486 DOI: 10.1083/jcb.201308083

Abstact

How is massive conformational change in integrins achieved on a rapid timescale? We report crystal structures of a metastable, putative transition state of integrin αXβ2. The αXβ2 ectodomain is bent; however, a lattice contact stabilizes its ligand-binding αI domain in a high affinity, open conformation. Much of the αI α7 helix unwinds, loses contact with the αI domain, and reshapes to form an internal ligand that binds to the interface between the β propeller and βI domains. Lift-off of the αI domain above this platform enables a range of extensional and rotational motions without precedent in allosteric machines. Movements of secondary structure elements in the β2 βI domain occur in an order different than in β3 integrins, showing that integrin β subunits can be specialized to assume different intermediate states between closed and open. Mutations demonstrate that the structure trapped here is metastable and can enable rapid equilibration between bent and extended-open integrin conformations and up-regulation of leukocyte adhesiveness.

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Primary Citation of related structures