4NEE image
Deposition Date 2013-10-29
Release Date 2014-01-29
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4NEE
Title:
crystal structure of AP-2 alpha/simga2 complex bound to HIV-1 Nef
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.88 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit sigma
Gene (Uniprot):Ap2s1
Chain IDs:A (auth: D), B (auth: L), C (auth: F), D (auth: I)
Chain Length:142
Number of Molecules:4
Biological Source:Rattus norvegicus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein Nef
Chain IDs:I (auth: E), J (auth: H), K, L (auth: C)
Chain Length:155
Number of Molecules:4
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AP-2 complex subunit alpha-2
Chain IDs:E (auth: G), F (auth: B), G (auth: J), H (auth: A)
Chain Length:398
Number of Molecules:4
Biological Source:Rattus norvegicus
Ligand Molecules
Primary Citation
How HIV-1 Nef hijacks the AP-2 clathrin adaptor to downregulate CD4.
Elife 3 e01754 e01754 (2014)
PMID: 24473078 DOI: 10.7554/eLife.01754

Abstact

The Nef protein of HIV-1 downregulates the cell surface co-receptor CD4 by hijacking the clathrin adaptor complex AP-2. The structural basis for the hijacking of AP-2 by Nef is revealed by a 2.9 Å crystal structure of Nef bound to the α and σ2 subunits of AP-2. Nef binds to AP-2 via its central loop (residues 149-179) and its core. The determinants for Nef binding include residues that directly contact AP-2 and others that stabilize the binding-competent conformation of the central loop. Residues involved in both direct and indirect interactions are required for the binding of Nef to AP-2 and for downregulation of CD4. These results lead to a model for the docking of the full AP-2 tetramer to membranes as bound to Nef, such that the cytosolic tail of CD4 is situated to interact with its binding site on Nef. DOI: http://dx.doi.org/10.7554/eLife.01754.001.

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Primary Citation of related structures