4NE9 image
Deposition Date 2013-10-28
Release Date 2014-09-10
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4NE9
Keywords:
Title:
PCSK9 in complex with LDLR peptide
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proprotein convertase subtilisin/kexin type 9
Gene (Uniprot):PCSK9
Chain IDs:A, B
Chain Length:540
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Proprotein convertase subtilisin/kexin type 9
Gene (Uniprot):PCSK9
Chain IDs:C, E (auth: P)
Chain Length:152
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Low-density lipoprotein receptor
Gene (Uniprot):LDLR
Chain IDs:D
Chain Length:26
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
Primary Citation
Design and synthesis of truncated EGF-A peptides that restore LDL-R recycling in the presence of PCSK9 in vitro.
Chem.Biol. 21 284 294 (2014)
PMID: 24440079 DOI: 10.1016/j.chembiol.2013.11.014

Abstact

Disrupting the binding interaction between proprotein convertase (PCSK9) and the epidermal growth factor-like domain A (EGF-A domain) in the low-density lipoprotein receptor (LDL-R) is a promising strategy to promote LDL-R recycling and thereby lower circulating cholesterol levels. In this study, truncated 26 amino acid EGF-A analogs were designed and synthesized, and their structures were analyzed in solution and in complex with PCSK9. The most potent peptide had an increased binding affinity for PCSK9 (KD = 0.6 μM) compared with wild-type EGF-A (KD = 1.2 μM), and the ability to increase LDL-R recycling in the presence of PCSK9 in a cell-based assay.

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Primary Citation of related structures