4NDT image
Entry Detail
PDB ID:
4NDT
Title:
Crystal structure of L. decastes alpha-galactosyl-binding lectin, orthorhombic crystal form
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2013-10-27
Release Date:
2014-12-10
Method Details:
Experimental Method:
Resolution:
1.03 Å
R-Value Free:
0.13
R-Value Work:
0.11
R-Value Observed:
0.11
Space Group:
P 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Alpha-galactosyl-binding lectin
Chain IDs:A
Chain Length:94
Number of Molecules:1
Biological Source:Lyophyllum decastes
Ligand Molecules
Primary Citation
Atomic-resolution structure of the alpha-galactosyl binding Lyophyllum decastes lectin reveals a new protein family found in both fungi and plants.
Glycobiology 25 492 501 (2015)
PMID: 25504801 DOI: 10.1093/glycob/cwu136

Abstact

The crystal structure of the α-galactosyl binding Lyophyllum decastes lectin (LDL) was determined to 1.0 Å resolution by sulfur single-wavelength anomalous diffraction (SAD). The 10 kDa protein exhibits no sequence similarity to any protein with known structure and adopts a unique lectin fold, where a core of two antiparallel β-sheets at the heart of the homodimer is connected to the periphery of the structure by intramolecular disulfide bridges. This fold suggests that LDL is secreted, which sets it apart from other mushroom lectins. Structures of complexes between LDL and the ligands α-methylgalactoside and globotriose shed light on the binding specificity. Sequence comparison suggests a location and function of LDL and homologous proteins in or at the fungal cell wall. Structural comparison allows the identification of a superfamily of secreted proteins with the LDL fold, which may play a role at the interface between fungi and their environment.

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