4NDP image
Deposition Date 2013-10-27
Release Date 2014-08-13
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4NDP
Title:
Crystal structure Molybdenum Storage Protein with fully Mo-loaded cavity
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.17
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Molybdenum storage protein subunit alpha
Gene (Uniprot):mosA
Chain IDs:B (auth: A)
Chain Length:276
Number of Molecules:1
Biological Source:Azotobacter vinelandii
Polymer Type:polypeptide(L)
Molecule:Molybdenum storage protein subunit beta
Gene (Uniprot):mosB
Chain IDs:A (auth: B)
Chain Length:270
Number of Molecules:1
Biological Source:Azotobacter vinelandii
Primary Citation
Structural diversity of polyoxomolybdate clusters along the three-fold axis of the molybdenum storage protein.
J.Inorg.Biochem. 138 122 128 (2014)
PMID: 24945101 DOI: 10.1016/j.jinorgbio.2014.05.009

Abstact

The molybdenum storage protein (MoSto) can store more than 100 Mo or W atoms as discrete polyoxometalate (POM) clusters. Here, we describe the three POM cluster sites along the threefold axis of the protein complex based on four X-ray structures with slightly different polyoxomolybdate compositions between 1.35 and 2 Å resolution. In contrast to the Moα-out binding site occupied by an Mo3 cluster, the Moα-in and Moβ binding sites contain rather weak and non-uniform electron density for the Mo atoms (but clearly identifiable by anomalous data), suggesting the presence of POM cluster ensembles and/or degradation products of larger aggregates. The "Moα-in cluster ensemble" was interpreted as an antiprism-like Mo6 species superimposed with an Mo7 pyramide and the "Moβ cluster ensemble" as an Mo13 cluster (present mostly in a degraded form) composed of a pyramidal Mo7 and a Mo3 building block linked by three spatially separated MoOx units. Inside the ball-shaped Mo13 cluster sits an occluded central atom, perhaps a metal ion. POM cluster formation at the Moα-in and Moβ sites appears to be driven by filtering out and binding/protecting self-assembled transient species complementary to the protein template.

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