4NCO image
Deposition Date 2013-10-24
Release Date 2013-11-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4NCO
Title:
Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with the Broadly Neutralizing Fab PGT122
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.70 Å
R-Value Free:
0.38
R-Value Work:
0.37
R-Value Observed:
0.37
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BG505 SOSIP gp120
Gene (Uniprot):env
Mutagens:T332N,A501C
Chain IDs:A, E, I
Chain Length:475
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:BG505 SOSIP gp41
Chain IDs:B, F, J
Chain Length:78
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Molecule:PGT122 light chain
Chain IDs:C, G, K
Chain Length:211
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:PGT122 heavy chain
Chain IDs:D, H, L
Chain Length:235
Number of Molecules:3
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
Ligand Molecules
Peptide-like Molecules
PRD_900111
Primary Citation
Crystal structure of a soluble cleaved HIV-1 envelope trimer.
Science 342 1477 1483 (2013)
PMID: 24179159 DOI: 10.1126/science.1245625

Abstact

HIV-1 entry into CD4(+) target cells is mediated by cleaved envelope glycoprotein (Env) trimers that have been challenging to characterize structurally. Here, we describe the crystal structure at 4.7 angstroms of a soluble, cleaved Env trimer that is stabilized and antigenically near-native (termed the BG505 SOSIP.664 gp140 trimer) in complex with a potent broadly neutralizing antibody, PGT122. The structure shows a prefusion state of gp41, the interaction between the component gp120 and gp41 subunits, and how a close association between the gp120 V1/V2/V3 loops stabilizes the trimer apex around the threefold axis. The complete epitope of PGT122 on the trimer involves gp120 V1, V3, and several surrounding glycans. This trimer structure advances our understanding of how Env functions and is presented to the immune system, and provides a blueprint for structure-based vaccine design.

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Primary Citation of related structures