ISDA

Deposition Date 2013-10-21

Release Date 2014-01-08

Last Version Date 2023-11-08

Entry Detail

PDB ID:

4N9F

Keywords:

LIGASE/VIRAL PROTEIN

Title:

Crystal structure of the Vif-CBFbeta-CUL5-ElOB-ElOC pentameric complex

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.30 Å

R-Value Free:

0.32

R-Value Work:

0.26

R-Value Observed:

0.26

Space Group:

P 1

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cullin-5
Gene (Uniprot):CUL5
Chain IDs:A (auth: U), F (auth: C), K (auth: I), P (auth: O), U (auth: V), Z (auth: f), EA (auth: l), JA (auth: r), OA (auth: x), TA (auth: 3), YA (auth: 9), DB (auth: w)
Chain Length:311
Number of Molecules:12
Biological Source:Homo sapiens

UniProt ID:Q93034 Pfam ID:PF00888

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor B polypeptide 2
Gene (Uniprot):ELOB
Chain IDs:C (auth: X), H (auth: D), M (auth: J), R (auth: P), W, BA (auth: g), GA (auth: m), LA (auth: s), QA (auth: y), VA (auth: 4), AB (auth: e), FB (auth: H)
Chain Length:102
Number of Molecules:12
Biological Source:Homo sapiens

UniProt ID:Q15370 Pfam ID:PF00240

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription elongation factor B polypeptide 1
Gene (Uniprot):ELOC
Chain IDs:B (auth: Y), G (auth: E), L (auth: K), Q, V (auth: Z), AA (auth: h), FA (auth: n), KA (auth: t), PA (auth: z), UA (auth: 5), ZA (auth: T), EB (auth: B)
Chain Length:96
Number of Molecules:12
Biological Source:Homo sapiens

UniProt ID:Q15369 Pfam ID:PF03931

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Core-binding factor subunit beta
Gene (Uniprot):CBFB
Chain IDs:D (auth: a), I (auth: F), N (auth: L), S (auth: R), X (auth: c), CA (auth: i), HA (auth: o), MA (auth: u), RA (auth: 0), WA (auth: 6), BB (auth: k), GB (auth: N)
Chain Length:170
Number of Molecules:12
Biological Source:Homo sapiens

UniProt ID:Q13951 Pfam ID:PF02312

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Virion infectivity factor
Chain IDs:E (auth: b), J (auth: G), O (auth: M), T (auth: S), Y (auth: d), DA (auth: j), IA (auth: p), NA (auth: v), SA (auth: 1), XA (auth: 7), CB (auth: q), HB (auth: 2)
Chain Length:176
Number of Molecules:12
Biological Source:Human immunodeficiency virus 1

UniProt ID:P12504 Pfam ID:PF00559

Ligand Molecules

Primary Citation

Structural basis for hijacking CBF-b and CUL5 E3 ligase complex by HIV-1 Vif

Guo, Y.Y, Dong, L.Y, Qiu, X.L, Wang, Y.S, Zhang, B.L, Liu, H.N, Yu, Y, Zang, Y, Yang, M.J, Huang, Z.W.Show

Nature 505 229 233 (2014)

Primary Citation of related structures