4N7K image
Entry Detail
PDB ID:
4N7K
Keywords:
Title:
Zinc Substituted Reaction Center of the Rhodobacter sphaeroides
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2013-10-15
Release Date:
2014-02-05
Method Details:
Experimental Method:
Resolution:
2.85 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Reaction Center H Chain
Chain IDs:A (auth: H)
Chain Length:241
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Polymer Type:polypeptide(L)
Description:Reaction center protein L chain
Chain IDs:B (auth: L)
Chain Length:281
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Polymer Type:polypeptide(L)
Description:Reaction center protein M chain
Chain IDs:C (auth: M)
Chain Length:303
Number of Molecules:1
Biological Source:Rhodobacter sphaeroides
Primary Citation
Structural and kinetic properties of Rhodobacter sphaeroides photosynthetic reaction centers containing exclusively Zn-coordinated bacteriochlorophyll as bacteriochlorin cofactors.
Biochim.Biophys.Acta 1837 366 374 (2013)
PMID: 24316146 DOI: 10.1016/j.bbabio.2013.11.015

Abstact

The Zn-BChl-containing reaction center (RC) produced in a bchD (magnesium chelatase) mutant of Rhodobacter sphaeroides assembles with six Zn-bacteriochlorophylls (Zn-BChls) in place of four Mg-containing bacteriochlorophylls (BChls) and two bacteriopheophytins (BPhes). This protein presents unique opportunities for studying biological electron transfer, as Zn-containing chlorins can exist in 4-, 5-, and (theoretically) 6-coordinate states within the RC. In this paper, the electron transfer perturbations attributed exclusively to coordination state effects are separated from those attributed to the presence, absence, or type of metal in the bacteriochlorin at the HA pocket of the RC. The presence of a 4-coordinate Zn(2+) ion in the HA bacteriochlorin instead of BPhe results in a small decrease in the rates of the P*→P(+)HA(-)→P(+)QA(-) electron transfer, and the charge separation yield is not greatly perturbed; however coordination of the Zn(2+) by a fifth ligand provided by a histidine residue results in a larger rate decrease and yield loss. We also report the first crystal structure of a Zn-BChl-containing RC, confirming that the HA Zn-BChl was either 4- or 5-coordinate in the two types of Zn-BChl-containing RCs studied here. Interestingly, a large degree of disorder, in combination with a relatively weak anomalous difference electron density was found in the HB pocket. These data, in combination with spectroscopic results, indicate partial occupancy of this binding pocket. These findings provide insights into the use of BPhe as the bacteriochlorin pigment of choice at HA in both BChl- and Zn-BChl-containing RCs found in nature.

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