4N71 image
Deposition Date 2013-10-14
Release Date 2013-11-27
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4N71
Keywords:
Title:
X-Ray Crystal Structure of 2-amino-1-hydroxyethylphosphonate-bound PhnZ
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.33
R-Value Work:
0.27
R-Value Observed:
0.28
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Predicted HD phosphohydrolase PhnZ
Gene (Uniprot):phnZ
Chain IDs:A, B, C (auth: D), D (auth: E)
Chain Length:198
Number of Molecules:4
Biological Source:uncultured bacterium HF130_AEPn_1
Primary Citation
Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.
Proc.Natl.Acad.Sci.USA 110 18874 18879 (2013)
PMID: 24198335 DOI: 10.1073/pnas.1315927110

Abstact

The founding members of the HD-domain protein superfamily are phosphohydrolases, and newly discovered members are generally annotated as such. However, myo-inositol oxygenase (MIOX) exemplifies a second, very different function that has evolved within the common scaffold of this superfamily. A recently discovered HD protein, PhnZ, catalyzes conversion of 2-amino-1-hydroxyethylphosphonate to glycine and phosphate, culminating a bacterial pathway for the utilization of environmentally abundant 2-aminoethylphosphonate. Using Mössbauer and EPR spectroscopies, X-ray crystallography, and activity measurements, we show here that, like MIOX, PhnZ employs a mixed-valent Fe(II)/Fe(III) cofactor for the O2-dependent oxidative cleavage of its substrate. Phylogenetic analysis suggests that many more HD proteins may catalyze yet-unknown oxygenation reactions using this hitherto exceptional Fe(II)/Fe(III) cofactor. The results demonstrate that the catalytic repertoire of the HD superfamily extends well beyond phosphohydrolysis and suggest that the mechanism used by MIOX and PhnZ may be a common strategy for oxidative C-X bond cleavage.

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