4N6V image
Deposition Date 2013-10-14
Release Date 2014-04-09
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4N6V
Title:
Partial rotational order disorder structure of human stefin B
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
I 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cystatin-B
Gene (Uniprot):CSTB
Chain IDs:A (auth: 2), B (auth: 1), C (auth: 9), D (auth: 8), E (auth: 7), F (auth: 6), G (auth: 4), H (auth: 3), I (auth: 0), J (auth: 5)
Chain Length:91
Number of Molecules:10
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Partial rotational lattice order-disorder in stefin B crystals.
Acta Crystallogr.,Sect.D 70 1015 1025 (2014)
PMID: 24699646 DOI: 10.1107/S1399004714000091

Abstact

At present, the determination of crystal structures from data that have been acquired from twinned crystals is routine; however, with the increasing number of crystal structures additional crystal lattice disorders are being discovered. Here, a previously undescribed partial rotational order-disorder that has been observed in crystals of stefin B is described. The diffraction images revealed normal diffraction patterns that result from a regular crystal lattice. The data could be processed in space groups I4 and I422, yet one crystal exhibited a notable rejection rate in the higher symmetry space group. An explanation for this behaviour was found once the crystal structures had been solved and refined and the electron-density maps had been inspected. The lattice of stefin B crystals is composed of five tetramer layers: four well ordered layers which are followed by an additional layer of alternatively placed tetramers. The presence of alternative positions was revealed by the inspection of electron-density score maps. The well ordered layers correspond to the crystal symmetry of space group I422. In addition, the positions of the molecules in the additional layer are related by twofold rotational axes which correspond to space group I422; however, these molecules lie on the twofold axis and can only be related in a statistical manner. When the occupancies of alternate positions and overlapping are equal, the crystal lattice indeed fulfills the criteria of space group I422; when these occupancies are not equal, the lattice only fulfills the criteria of space group I4.

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