4N6R image
Entry Detail
PDB ID:
4N6R
Title:
Crystal structure of VosA-VelB-complex
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-10-14
Release Date:
2014-01-22
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:VosA
Chain IDs:A
Chain Length:200
Number of Molecules:1
Biological Source:Emericella nidulans
Polymer Type:polypeptide(L)
Description:VelB
Chain IDs:B
Chain Length:377
Number of Molecules:1
Biological Source:Emericella nidulans
Ligand Molecules
Primary Citation
The Velvet Family of Fungal Regulators Contains a DNA-Binding Domain Structurally Similar to NF-kappa B.
Plos Biol. 11 e1001750 e1001750 (2013)
PMID: 24391470 DOI: 10.1371/journal.pbio.1001750

Abstact

Morphological development of fungi and their combined production of secondary metabolites are both acting in defence and protection. These processes are mainly coordinated by velvet regulators, which contain a yet functionally and structurally uncharacterized velvet domain. Here we demonstrate that the velvet domain of VosA is a novel DNA-binding motif that specifically recognizes an 11-nucleotide consensus sequence consisting of two motifs in the promoters of key developmental regulatory genes. The crystal structure analysis of the VosA velvet domain revealed an unforeseen structural similarity with the Rel homology domain (RHD) of the mammalian transcription factor NF-κB. Based on this structural similarity several conserved amino acid residues present in all velvet domains have been identified and shown to be essential for the DNA binding ability of VosA. The velvet domain is also involved in dimer formation as seen in the solved crystal structures of the VosA homodimer and the VosA-VelB heterodimer. These findings suggest that defence mechanisms of both fungi and animals might be governed by structurally related DNA-binding transcription factors.

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Primary Citation of related structures