4N6O image
Deposition Date 2013-10-14
Release Date 2015-02-11
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4N6O
Title:
Crystal structure of reduced legumain in complex with cystatin E/M
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:legumain
Gene (Uniprot):LGMN
Mutations:N263Q
Chain IDs:A
Chain Length:278
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:cystatin-M
Gene (Uniprot):CST6
Chain IDs:B
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
SNN A ASP L-3-AMINOSUCCINIMIDE
Ligand Molecules
Primary Citation
Structure and mechanism of an aspartimide-dependent Peptide ligase in human legumain.
Angew.Chem.Int.Ed.Engl. 54 2917 2921 (2015)
PMID: 25630877 DOI: 10.1002/anie.201409135

Abstact

Peptide ligases expand the repertoire of genetically encoded protein architectures by synthesizing new peptide bonds, energetically driven by ATP or NTPs. Here, we report the discovery of a genuine ligase activity in human legumain (AEP) which has important roles in immunity and tumor progression that were believed to be due to its established cysteine protease activity. Defying dogma, the ligase reaction is independent of the catalytic cysteine but exploits an endogenous energy reservoir that results from the conversion of a conserved aspartate to a metastable aspartimide. Legumain's dual protease-ligase activities are pH- and thus localization controlled, dominating at acidic and neutral pH, respectively. Their relevance includes reversible on-off switching of cystatin inhibitors and enzyme (in)activation, and may affect the generation of three-dimensional MHC epitopes. The aspartate-aspartimide (succinimide) pair represents a new paradigm of coupling endergonic reactions in ATP-scarce environments.

Legend

Protein

Chemical

Disease

Primary Citation of related structures