4N5Y image
Deposition Date 2013-10-10
Release Date 2013-11-20
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4N5Y
Keywords:
Title:
Crystal structure of H5 hemagglutinin mutant (N158D, N224K and Q226L) from the influenza virus A/Viet Nam/1203/2004 (H5N1)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.16 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Mutagens:N158D, N224K, Q226L
Chain IDs:A, B (auth: C), C (auth: E), D (auth: G), E (auth: I), F (auth: K), G (auth: M), H (auth: O), I (auth: Q), J (auth: S), K (auth: U), L (auth: W), M (auth: Y), N (auth: a), O (auth: c)
Chain Length:334
Number of Molecules:15
Biological Source:Influenza A virus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:P (auth: B), Q (auth: D), R (auth: F), S (auth: H), T (auth: J), U (auth: L), V (auth: N), W (auth: P), X (auth: R), Y (auth: T), Z (auth: V), AA (auth: X), BA (auth: Z), CA (auth: b), DA (auth: d)
Chain Length:181
Number of Molecules:15
Biological Source:Influenza A virus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN L ASN GLYCOSYLATION SITE
Ligand Molecules
Primary Citation
Hemagglutinin Receptor Specificity and Structural Analyses of Respiratory Droplet-Transmissible H5N1 Viruses.
J.Virol. 88 768 773 (2014)
PMID: 24173215 DOI: 10.1128/JVI.02690-13

Abstact

Two ferret-adapted H5N1 viruses capable of respiratory droplet transmission have been reported with mutations in the hemagglutinin receptor-binding site and stalk domains. Glycan microarray analysis reveals that both viruses exhibit a strong shift toward binding to "human-type" α2-6 sialosides but with notable differences in fine specificity. Crystal structure analysis further shows that the stalk mutation causes no obvious perturbation of the receptor-binding pocket, consistent with its impact on hemagglutinin stability without affecting receptor specificity.

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Protein

Chemical

Disease

Primary Citation of related structures
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