4N33 image
Entry Detail
PDB ID:
4N33
Title:
Structure of langerin CRD complexed with GlcNAc-beta1-3Gal-beta1-4Glc-beta-CH2CH2N3
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-10-06
Release Date:
2013-11-20
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 42
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:C-type lectin domain family 4 member K
Chain IDs:A, B, C, D
Chain Length:136
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Common polymorphisms in human langerin change specificity for glycan ligands.
J.Biol.Chem. 288 36762 36771 (2013)
PMID: 24217250 DOI: 10.1074/jbc.M113.528000

Abstact

Langerin, a C-type lectin on Langerhans cells, mediates carbohydrate-dependent uptake of pathogens in the first step of antigen presentation to the adaptive immune system. Langerin binds a diverse range of carbohydrates including high mannose structures, fucosylated blood group antigens, and glycans with terminal 6-sulfated galactose. Mutagenesis and quantitative binding assays indicate that salt bridges between the sulfate group and two lysine residues compensate for the nonoptimal binding of galactose at the primary Ca(2+) site. A commonly occurring single nucleotide polymorphism (SNP) in human langerin results in change of one of these lysine residues, Lys-313, to isoleucine. Glycan array screening reveals that this amino acid change abolishes binding to oligosaccharides with terminal 6SO4-Gal and enhances binding to oligosaccharides with terminal GlcNAc residues. Structural analysis shows that enhanced binding to GlcNAc may result from Ile-313 packing against the N-acetyl group. The K313I polymorphism is tightly linked to another SNP that results in the change N288D, which reduces affinity for glycan ligands by destabilizing the Ca(2+)-binding site. Langerin with Asp-288 and Ile-313 shows no binding to 6SO4-Gal-terminated glycans and increased binding to GlcNAc-terminated structures, but overall decreased binding to glycans. Altered langerin function in individuals with the linked N288D and K313I polymorphisms may affect susceptibility to infection by microorganisms.

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Primary Citation of related structures