4MZC image
Deposition Date 2013-09-30
Release Date 2013-10-09
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4MZC
Keywords:
Title:
Atomic Resolution Structure of PfGrx1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
0.95 Å
R-Value Free:
0.11
R-Value Work:
0.10
R-Value Observed:
0.10
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glutaredoxin
Gene (Uniprot):PF3D7_0306300
Chain IDs:A
Chain Length:111
Number of Molecules:1
Biological Source:Plasmodium falciparum
Primary Citation
Atomic resolution crystal structure of glutaredoxin 1 from Plasmodium falciparum and comparison with other glutaredoxins.
Acta Crystallogr.,Sect.D 70 91 100 (2014)
PMID: 24419382 DOI: 10.1107/S1399004713025285

Abstact

Glutaredoxins (Grxs) are redox proteins that use glutathione ((γ)Glu-Cys-Gly; GSH) as a cofactor. Plasmodium falciparum has one classic dithiol (CXXC) glutaredoxin (glutaredoxin 1; PfGrx1) and three monothiol (CXXS) Grx-like proteins (GLPs), which have five residue insertions prior to the active-site Cys. Here, the crystal structure of PfGrx1 has been determined by the sulfur single-wavelength anomalous diffraction (S-SAD) method utilizing intrinsic protein and solvent S atoms. Several residues were modelled with alternate conformations, and an alternate position was refined for the active-site Cys29 owing to radiation damage. The GSH-binding site is occupied by water polygons and buffer molecules. Structural comparison of PfGrx1 with other Grxs and Grx-like proteins revealed that the GSH-binding motifs (CXXC/CXXS, TVP, CDD, Lys26 and Gln/Arg63) are structurally conserved. Both the monothiol and dithiol Grxs possess three conserved water molecules; two of these were located in the GSH-binding site. PfGrx1 has several polar and charged amino-acid substitutions that provide structurally important additional hydrogen bonds and salt bridges missing in other Grxs.

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