4MP7 image
Entry Detail
PDB ID:
4MP7
Title:
Crystal structure of pyruvate dehydrogenase kinase isoform 2 in complex with inhibitor PA7
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-09-12
Release Date:
2014-01-01
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:[Pyruvate dehydrogenase [lipoamide]] kinase isozyme 2, mitochondrial
Chain IDs:A
Chain Length:400
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structure-guided Development of Specific Pyruvate Dehydrogenase Kinase Inhibitors Targeting the ATP-binding Pocket.
J.Biol.Chem. 289 4432 4443 (2014)
PMID: 24356970 DOI: 10.1074/jbc.M113.533885

Abstact

Pyruvate dehydrogenase kinase isoforms (PDKs 1-4) negatively regulate activity of the mitochondrial pyruvate dehydrogenase complex by reversible phosphorylation. PDK isoforms are up-regulated in obesity, diabetes, heart failure, and cancer and are potential therapeutic targets for these important human diseases. Here, we employed a structure-guided design to convert a known Hsp90 inhibitor to a series of highly specific PDK inhibitors, based on structural conservation in the ATP-binding pocket. The key step involved the substitution of a carbonyl group in the parent compound with a sulfonyl in the PDK inhibitors. The final compound of this series, 2-[(2,4-dihydroxyphenyl)sulfonyl]isoindoline-4,6-diol, designated PS10, inhibits all four PDK isoforms with IC50 = 0.8 μM for PDK2. The administration of PS10 (70 mg/kg) to diet-induced obese mice significantly augments pyruvate dehydrogenase complex activity with reduced phosphorylation in different tissues. Prolonged PS10 treatments result in improved glucose tolerance and notably lessened hepatic steatosis in the mouse model. The results support the pharmacological approach of targeting PDK to control both glucose and fat levels in obesity and type 2 diabetes.

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