4MP3 image
Deposition Date 2013-09-12
Release Date 2014-03-05
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4MP3
Keywords:
Title:
Staphyloferrin B precursor biosynthetic enzyme selenomethionine-labeled SbnB
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.21
R-Value Work:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative ornithine cyclodeaminase
Chain IDs:A
Chain Length:339
Number of Molecules:1
Biological Source:Staphylococcus aureus subsp. aureus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET SELENOMETHIONINE
Primary Citation
Synthesis of L-2,3-diaminopropionic Acid, a siderophore and antibiotic precursor.
Chem.Biol. 21 379 388 (2014)
PMID: 24485762 DOI: 10.1016/j.chembiol.2013.12.011

Abstact

L-2,3-diaminopropionic acid (L-Dap) is an amino acid that is a precursor of antibiotics and staphyloferrin B a siderophore produced by Staphylococcus aureus. SbnA and SbnB are encoded by the staphyloferrin B biosynthetic gene cluster and are implicated in L-Dap biosynthesis. We demonstrate here that SbnA uses PLP and substrates O-phospho-L-serine and L-glutamate to produce a metabolite N-(1-amino-1-carboxyl-2-ethyl)-glutamic acid (ACEGA). SbnB is shown to use NAD(+) to oxidatively hydrolyze ACEGA to yield α-ketoglutarate and L-Dap. Also, we describe crystal structures of SbnB in complex with NADH and ACEGA as well as with NAD(+) and α-ketoglutarate to reveal the residues required for substrate binding, oxidation, and hydrolysis. SbnA and SbnB contribute to the iron sparing response of S. aureus that enables staphyloferrin B biosynthesis in the absence of an active tricarboxylic acid cycle.

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Primary Citation of related structures