4MNG image
Deposition Date 2013-09-10
Release Date 2013-12-18
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4MNG
Keywords:
Title:
Structure of the DP10.7 TCR with CD1d-sulfatide
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.01 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cd1d1 protein
Gene (Uniprot):CD1D
Mutations:human CD1d alpha3 domain replaced with mouse CD1d alpha3 domain
Chain IDs:B (auth: A), D (auth: C)
Chain Length:281
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2m
Chain IDs:A (auth: B), C (auth: D)
Chain Length:99
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:TRA@ protein,TRA@ protein, Ti antigen CD3-associated protein gamma chain V-J-C region
Gene (Uniprot):TRA@
Mutations:end of gamma sequence TLVV swapped with KLII
Chain IDs:E, F
Chain Length:262
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN D ASN GLYCOSYLATION SITE
Primary Citation
Crystal Structure of V delta 1 T Cell Receptor in Complex with CD1d-Sulfatide Shows MHC-like Recognition of a Self-Lipid by Human gamma delta T Cells.
Immunity 39 1032 1042 (2013)
PMID: 24239091 DOI: 10.1016/j.immuni.2013.11.001

Abstact

The nature of the antigens recognized by γδ T cells and their potential recognition of major histocompatibility complex (MHC)-like molecules has remained unclear. Members of the CD1 family of lipid-presenting molecules are suggested ligands for Vδ1 TCR-expressing γδ T cells, the major γδ lymphocyte population in epithelial tissues. We crystallized a Vδ1 TCR in complex with CD1d and the self-lipid sulfatide, revealing the unusual recognition of CD1d by germline Vδ1 residues spanning all complementarity-determining region (CDR) loops, as well as sulfatide recognition separately encoded by nongermline CDR3δ residues. Binding and functional analysis showed that CD1d presenting self-lipids, including sulfatide, was widely recognized by gut Vδ1+ γδ T cells. These findings provide structural demonstration of MHC-like recognition of a self-lipid by γδ T cells and reveal the prevalence of lipid recognition by innate-like T cell populations.

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Primary Citation of related structures