4MNB image
Deposition Date 2013-09-10
Release Date 2015-03-11
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4MNB
Keywords:
Title:
Crystal Structure of a complex between the marine anticancer drug Variolin B and DNA
Biological Source:
Source Organism:
(Taxon ID: ) (Taxon ID: )
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*CP*GP*TP*AP*CP*G)-3'
Chain IDs:A, B
Chain Length:6
Number of Molecules:2
Biological Source:
Primary Citation
Intercalative DNA binding of the marine anticancer drug variolin B.
Sci Rep 7 39680 39680 (2017)
PMID: 28051169 DOI: 10.1038/srep39680

Abstact

Variolin B is a rare marine alkaloid that showed promising anti-cancer activity soon after its isolation. It acts as a cyclin-dependent kinase inhibitor, although the precise mechanism through which it exerts the cytotoxic effects is still unknown. The crystal structure of a variolin B bound to a DNA forming a pseudo-Holliday junction shows that this compound can also contribute, through intercalative binding, to either the formation or stabilization of multi-stranded DNA forms.

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Primary Citation of related structures