4MKI image
Deposition Date 2013-09-05
Release Date 2013-10-30
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4MKI
Keywords:
Title:
Cobalt transporter ATP-binding subunit
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Energy-coupling factor transporter ATP-binding protein EcfA2
Gene (Uniprot):ecfA2
Chain IDs:A (auth: B), B (auth: A)
Chain Length:298
Number of Molecules:2
Biological Source:Thermoanaerobacter tengcongensis
Primary Citation
Structural basis for a homodimeric ATPase subunit of an ECF transporter
Protein Cell 4 793 801 (2013)
PMID: 24104393 DOI: 10.1007/s13238-013-3915-y

Abstact

The transition metal cobalt, an essential cofactor for many enzymes in prokaryotes, is taken up by several specific transport systems. The CbiMNQO protein complex belongs to type-1 energy-coupling factor (ECF) transporters and is a widespread group of microbial cobalt transporters. CbiO is the ATPase subunit (A-component) of the cobalt transporting system in the gram-negative thermophilic bacterium Thermoanaerobacter tengcongensis. Here we report the crystal structure of a nucleotide-free CbiO at a resolution of 2.3 Å. CbiO contains an N-terminal canonical nucleotide-binding domain (NBD) and C-terminal helical domain. Structural and biochemical data show that CbiO forms a homodimer mediated by the NBD and the C-terminal domain. Interactions mainly via conserved hydrophobic amino acids between the two C-terminal domains result in formation of a four-helix bundle. Structural comparison with other ECF transporters suggests that non-conserved residues outside the T-component binding groove in the A component likely act as a specificity determinant for T components. Together, our data provide information on understanding of the structural organization and interaction of the CbiMNQO system.

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