4MJ2 image
Entry Detail
PDB ID:
4MJ2
Keywords:
Title:
Crystal structure of apo-iduronidase in the R3 form
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-09-03
Release Date:
2013-09-18
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.20
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Alpha-L-iduronidase
Chain IDs:A, B
Chain Length:653
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
Primary Citation
Insights into mucopolysaccharidosis I from the structure and action of alpha-L-iduronidase.
Nat.Chem.Biol. 9 739 745 (2013)
PMID: 24036510 DOI: 10.1038/nchembio.1357

Abstact

Mucopolysaccharidosis type I (MPS I), caused by mutations in the gene encoding α-L-iduronidase (IDUA), is one of approximately 70 genetic disorders collectively known as the lysosomal storage diseases. To gain insight into the basis for MPS I, we crystallized human IDUA produced in an Arabidopsis thaliana cgl mutant. IDUA consists of a TIM barrel domain containing the catalytic site, a β-sandwich domain and a fibronectin-like domain. Structures of IDUA bound to iduronate analogs illustrate the Michaelis complex and reveal a (2,5)B conformation in the glycosyl-enzyme intermediate, which suggest a retaining double displacement reaction involving the nucleophilic Glu299 and the general acid/base Glu182. Unexpectedly, the N-glycan attached to Asn372 interacts with iduronate analogs in the active site and is required for enzymatic activity. Finally, these IDUA structures and biochemical analysis of the disease-relevant P533R mutation have enabled us to correlate the effects of mutations in IDUA to clinical phenotypes.

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Primary Citation of related structures