4MH1 image
Deposition Date 2013-08-29
Release Date 2014-07-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4MH1
Keywords:
Title:
Crystal structure and functional studies of quinoprotein L-sorbose dehydrogenase from Ketogulonicigenium vulgare Y25
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 4 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sorbose dehydrogenase
Chain IDs:A, B
Chain Length:560
Number of Molecules:2
Biological Source:Ketogulonicigenium vulgare
Primary Citation
Crystal structure of L-sorbose dehydrogenase, a pyrroloquinoline quinone-dependent enzyme with homodimeric assembly, from Ketogulonicigenium vulgare
Biotechnol.Lett. 36 1001 1008 (2014)
PMID: 24557074 DOI: 10.1007/s10529-013-1446-5

Abstact

The crystal structure of the L-sorbose dehydrogenase (SDH) from Ketogulonicigenium vulgare Y25 has been determined at 2.7 Å resolution using the molecular replacement method. The overall structure of SDH is similar to that of other quinoprotein dehydrogenases; consisting of an eight bladed β-propeller PQQ domain and protrusion loops. We identified a stable homodimer in crystal and demonstrated its existence in solution by sedimentation velocity measurement. By biochemical characterization of the SDH in vitro, using L-sorbose as substrate and cytochrome c551 as electron acceptor, we revealed cytochrome c551 acting as physiological primary electron acceptor for SDH.

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