4MCX image
Deposition Date 2013-08-21
Release Date 2013-12-11
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4MCX
Keywords:
Title:
P. vulgaris HIGBA structure, crystal form 2
Biological Source:
Source Organism:
Proteus vulgaris (Taxon ID: 585)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 62
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Antidote protein
Gene (Uniprot):higA
Chain IDs:A, C, E
Chain Length:104
Number of Molecules:3
Biological Source:Proteus vulgaris
Polymer Type:polypeptide(L)
Molecule:Killer protein
Gene (Uniprot):higB
Chain IDs:B, D, F
Chain Length:113
Number of Molecules:3
Biological Source:Proteus vulgaris
Primary Citation
Structure of the Proteus vulgaris HigB-(HigA)2-HigB Toxin-Antitoxin Complex.
J.Biol.Chem. 289 1060 1070 (2014)
PMID: 24257752 DOI: 10.1074/jbc.M113.512095

Abstact

Bacterial toxin-antitoxin (TA) systems regulate key cellular processes to promote cell survival during periods of stress. During steady-state cell growth, antitoxins typically interact with their cognate toxins to inhibit activity presumably by preventing substrate recognition. We solved two x-ray crystal structures of the Proteus vulgaris tetrameric HigB-(HigA)2-HigB TA complex and found that, unlike most other TA systems, the antitoxin HigA makes minimal interactions with toxin HigB. HigB adopts a RelE family tertiary fold containing a highly conserved concave surface where we predict its active site is located. HigA does not cover the solvent-exposed HigB active site, suggesting that, in general, toxin inhibition is not solely mediated by active site hindrance by its antitoxin. Each HigA monomer contains a helix-turn-helix motif that binds to its own DNA operator to repress transcription during normal cellular growth. This is distinct from antitoxins belonging to other superfamilies that typically only form DNA-binding motifs upon dimerization. We further show that disruption of the HigB-(HigA)2-HigB tetramer to a HigBA heterodimer ablates operator binding. Taken together, our biochemical and structural studies elucidate the novel molecular details of the HigBA TA system.

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