4MC3 image
Entry Detail
PDB ID:
4MC3
Keywords:
Title:
Hedycaryol synthase in complex with Nerolidol
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-08-21
Release Date:
2014-01-29
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Putative sesquiterpene cyclase
Chain IDs:A
Chain Length:346
Number of Molecules:1
Biological Source:Kitasatospora setae
Ligand Molecules
Primary Citation
Hedycaryol synthase in complex with nerolidol reveals terpene cyclase mechanism.
Chembiochem 15 213 216 (2014)
PMID: 24399794 DOI: 10.1002/cbic.201300708

Abstact

The biosynthesis of terpenes is catalysed by class I and II terpene cyclases. Here we present structural data from a class I hedycaryol synthase in complex with nerolidol, serving as a surrogate for the reaction intermediate nerolidyl diphosphate. This prefolded ligand allows mapping of the active site and hence the identification of a key carbonyl oxygen of Val179, a highly conserved helix break (G1/2) and its corresponding helix dipole. Stabilising the carbocation at the substrate's C1 position, these elements act in concert to catalyse the 1,10 ring closure, thereby exclusively generating the anti-Markovnikov product. The delineation of a general mechanistic scaffold was confirmed by site-specific mutations. This work serves as a basis for understanding carbocation chemistry in enzymatic reactions and should contribute to future application of these enzymes in organic synthesis.

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Primary Citation of related structures