4MAY image
Deposition Date 2013-08-18
Release Date 2013-10-23
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4MAY
Keywords:
Title:
Crystal structure of an immune complex
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC class II HLA-DQ-alpha chain
Gene (Uniprot):HLA-DQA1
Chain IDs:A
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MHC class II antigen
Gene (Uniprot):HLA-DQB1
Chain IDs:B
Chain Length:200
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:HY.1B11 TCR alpha chain
Chain IDs:C
Chain Length:209
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:UL15 peptide-HY.1B11 TCR beta chain, chimeric construct
Chain IDs:D
Chain Length:266
Number of Molecules:1
Biological Source:unidentified herpesvirus, homo sapiens
Ligand Molecules
Primary Citation
Crossreactivity of a human autoimmune TCR is dominated by a single TCR loop.
Nat Commun 4 2623 2623 (2013)
PMID: 24136005 DOI: 10.1038/ncomms3623

Abstact

Self-reactive CD4 T cells are thought to have a central role in the pathogenesis of many chronic inflammatory human diseases. Microbial peptides can activate self-reactive T cells, but the structural basis for such crossreactivity is not well understood. The Hy.1B11 T cell receptor (TCR) originates from a patient with multiple sclerosis and recognizes the self-antigen myelin basic protein. Here we report the structural mechanism of TCR crossreactivity with two distinct peptides from human pathogens. The structures show that a single TCR residue (CDR3α F95) makes the majority of contacts with the self-peptide and both microbial peptides (66.7-80.6%) due to a highly tilted TCR-binding topology on the peptide-MHC surface. Further, a neighbouring residue located on the same TCR loop (CDR3α E98) forms an energetically critical interaction with the MHC molecule. These data show how binding by a self-reactive TCR favors crossreactivity between self and microbial antigens.

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Protein

Chemical

Disease

Primary Citation of related structures