ISDA

Deposition Date 2013-08-14

Release Date 2014-05-07

Last Version Date 2023-09-20

Entry Detail

PDB ID:

4M8X

Keywords:

Hydrolase/Hydrolase Inhibitor

Title:

GS-8374, a Novel Phosphonate-Containing Inhibitor of HIV-1 Protease, Effectively Inhibits HIV PR Mutants with Amino Acid Insertions

Biological Source:

Source Organism:

Human immunodeficiency virus 1 (Taxon ID: 11676)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.05 Å

R-Value Free:

0.26

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 61

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protease
Gene (Uniprot):pol
Mutations:L10F, I13V, G16A, K20M, D37S, I46V, I54M, A71V
Chain IDs:A, B
Chain Length:99
Number of Molecules:2
Biological Source:Human immunodeficiency virus 1

UniProt ID:Q90JJ9 Pfam ID:PF00077

Ligand Molecules

KGQ

Primary Citation

GS-8374, a prototype phosphonate-containing inhibitor of HIV-1 protease, effectively inhibits protease mutants with amino acid insertions.

Grantz Saskova, K, Kozisek, M, Stray, K, de Jong, D, Rezaova, P, Brynda, J, van Maarseveen, N.M, Nijhuis, M, Cihlar, T, Konvalinka, J.Show

J.Virol. 88 3586 3590 (2014)

PMID: 24371077 DOI: 10.1128/JVI.02688-13

Abstact

Insertions in the protease (PR) region of human immunodeficiency virus (HIV) represent an interesting mechanism of antiviral resistance against HIV PR inhibitors (PIs). Here, we demonstrate the improved ability of a phosphonate-containing experimental HIV PI, GS-8374, relative to that of other PIs, to effectively inhibit patient-derived recombinant HIV strains bearing PR insertions and numerous other mutations. We correlate enzyme inhibition with the catalytic activities of corresponding recombinant PRs in vitro and provide a biochemical and structural analysis of the PR-inhibitor complex.

Legend

Protein

Chemical

Disease

Primary Citation of related structures