4M63 image
Deposition Date 2013-08-08
Release Date 2013-10-23
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4M63
Title:
Crystal Structure of a Filament-Like Actin Trimer Bound to the Bacterial Effector VopL
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T3SS2 effector VopL nucleation of actin polymerization
Chain IDs:A, B
Chain Length:241
Number of Molecules:2
Biological Source:Vibrio parahaemolyticus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin-5C
Gene (Uniprot):Act5C
Mutagens:D286A, V287A, D288A
Chain IDs:C, D, E
Chain Length:377
Number of Molecules:3
Biological Source:Drosophila melanogaster
Primary Citation
The Bacterial Effector VopL Organizes Actin into Filament-like Structures.
Cell(Cambridge,Mass.) 155 423 434 (2013)
PMID: 24120140 DOI: 10.1016/j.cell.2013.09.019

Abstact

VopL is an effector protein from Vibrio parahaemolyticus that nucleates actin filaments. VopL consists of a VopL C-terminal domain (VCD) and an array of three WASP homology 2 (WH2) motifs. Here, we report the crystal structure of the VCD dimer bound to actin. The VCD organizes three actin monomers in a spatial arrangement close to that found in the canonical actin filament. In this arrangement, WH2 motifs can be modeled into the binding site of each actin without steric clashes. The data suggest a mechanism of nucleation wherein VopL creates filament-like structures, organized by the VCD with monomers delivered by the WH2 array, that can template addition of new subunits. Similarities with Arp2/3 complex and formin proteins suggest that organization of monomers into filament-like structures is a general and central feature of actin nucleation.

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