4M4W image
Deposition Date 2013-08-07
Release Date 2013-09-25
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4M4W
Keywords:
Title:
Mechanistic implications for the bacterial primosome assembly of the structure of a helicase-helicase loader complex
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.10 Å
R-Value Free:
0.39
R-Value Work:
0.37
R-Value Observed:
0.37
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Replicative helicase
Gene (Uniprot):dnaB
Chain IDs:A, B, C, D, E, F
Chain Length:454
Number of Molecules:6
Biological Source:Geobacillus stearothermophilus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA primase
Gene (Uniprot):dnaG
Chain IDs:G, H, I
Chain Length:143
Number of Molecules:3
Biological Source:Geobacillus stearothermophilus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Primosomal protein DnaI
Gene (Uniprot):dnaI
Chain IDs:J, K, L, M, N, O
Chain Length:317
Number of Molecules:6
Biological Source:Bacillus subtilis subsp. subtilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE G MET SELENOMETHIONINE
Ligand Molecules
Primary Citation
Structure of a helicase-helicase loader complex reveals insights into the mechanism of bacterial primosome assembly.
Nat Commun 4 2495 2495 (2013)
PMID: 24048025 DOI: 10.1038/ncomms3495

Abstact

During the assembly of the bacterial loader-dependent primosome, helicase loader proteins bind to the hexameric helicase ring, deliver it onto the oriC DNA and then dissociate from the complex. Here, to provide a better understanding of this key process, we report the crystal structure of the ~570-kDa prepriming complex between the Bacillus subtilis loader protein and the Bacillus stearothermophilus helicase, as well as the helicase-binding domain of primase with a molar ratio of 6:6:3 at 7.5 Å resolution. The overall architecture of the complex exhibits a three-layered ring conformation. Moreover, the structure combined with the proposed model suggests that the shift from the 'open-ring' to the 'open-spiral' and then the 'closed-spiral' state of the helicase ring due to the binding of single-stranded DNA may be the cause of the loader release.

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Protein

Chemical

Disease

Primary Citation of related structures
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