4LY8 image
Entry Detail
PDB ID:
4LY8
Keywords:
Title:
dihydrodipicolinate synthase from C. jejuni with pyruvate bound to the active site
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2013-07-30
Release Date:
2015-01-14
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:4-hydroxy-tetrahydrodipicolinate synthase
Chain IDs:A, B, C, D
Chain Length:306
Number of Molecules:4
Biological Source:Campylobacter jejuni subsp. jejuni
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
KPI A LYS ?
Primary Citation
Tyrosine 110 Plays a Critical Role in Regulating the Allosteric Inhibition of Campylobacter jejuni Dihydrodipicolinate Synthase by Lysine.
Biochemistry 53 7396 7406 (2014)
PMID: 25369463 DOI: 10.1021/bi5012157

Abstact

Dihydrodipicolinate synthase (DHDPS), an enzyme found in most bacteria and plants, controls a critical step in the biosynthesis of l-lysine and meso-diaminopimelate, necessary components for bacterial cell wall biosynthesis. DHDPS catalyzes the condensation of pyruvate and (S)-aspartate-β-semialdehyde, forming an unstable product that is dehydrated to dihydrodipicolinate. The tetrameric enzyme is allosterically inhibited by l-lysine, and a better understanding of the allosteric inhibition mechanism is necessary for the design of potent antibacterial therapeutics. Here we describe the high-resolution crystal structures of DHDPS from Campylobacter jejuni with and without its inhibitor bound to the allosteric sites. These structures reveal a role for Y110 in the regulation of the allosteric inhibition by lysine. Mutation of Y110 to phenylalanine results in insensitivity to lysine inhibition, although the mutant crystal structure reveals that lysine does bind in the allosteric site. Comparison of the lysine-bound Y110F structure with wild-type structures reveals that key structural changes due to lysine binding are absent in this mutant.

Legend

Protein

Chemical

Disease

Primary Citation of related structures