4LXL image
Deposition Date 2013-07-30
Release Date 2014-07-30
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4LXL
Keywords:
OXIDOREDUCTASE/PEPTIDE
Title:
Crystal structure of JMJD2B complexed with pyridine-2,4-dicarboxylic acid and H3K9me3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.87 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
4LXL validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysine-specific demethylase 4B
Gene (Uniprot):KDM4B
Chain IDs:A
Chain Length:368
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O94953 Pfam ID:PF02375, PF02373 EC:1.14.11.27
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:H3 peptide
Chain IDs:B (auth: D)
Chain Length:8
Number of Molecules:1
Biological Source:human
UniProt ID:P68431
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
M3L B LYS N-TRIMETHYLLYSINE
Ligand Molecules
NI
PD2
ZN
Primary Citation
Crystal structure of JMJD2B complexed with pyridine-2,4-dicarboxylic acid and H3K9me3
To be Published ? ? ? (?)
Primary Citation of related structures
4LXL