4LX5 image
Deposition Date 2013-07-29
Release Date 2014-07-16
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4LX5
Keywords:
Title:
X-ray crystal structure of the M6" riboswitch aptamer bound to pyrimido[4,5-d]pyrimidine-2,4-diamine (PPDA)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.13 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:Mutated adenine riboswitch aptamer
Mutations:U28G, G42C, U47C, U51C
Chain IDs:A
Chain Length:71
Number of Molecules:1
Biological Source:Vibrio vulnificus
Primary Citation
Modular riboswitch toolsets for synthetic genetic control in diverse bacterial species.
J.Am.Chem.Soc. 136 10615 10624 (2014)
PMID: 24971878 DOI: 10.1021/ja502873j

Abstact

Ligand-dependent control of gene expression is essential for gene functional analysis, target validation, protein production, and metabolic engineering. However, the expression tools currently available are difficult to transfer between species and exhibit limited mechanistic diversity. Here we demonstrate how the modular architecture of purine riboswitches can be exploited to develop orthogonal and chimeric switches that are transferable across diverse bacterial species, modulating either transcription or translation, to provide tunable activation or repression of target gene expression, in response to synthetic non-natural effector molecules. Our novel riboswitch-ligand pairings are shown to regulate physiologically important genes required for bacterial motility in Escherichia coli and cell morphology in Bacillus subtilis. These findings are relevant for future gene function studies and antimicrobial target validation, while providing new modular and orthogonal regulatory components for deployment in synthetic biology regimes.

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