4LVL image
Entry Detail
PDB ID:
4LVL
Title:
MobM Relaxase Domain (MOBV; Mob_Pre) bound to plasmid pMV158 oriT DNA (22nt+3'Thiophosphate). Mn-bound crystal structure at pH 6.8
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2013-07-26
Release Date:
2014-09-24
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 61 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Plasmid recombination enzyme
Chain IDs:A
Chain Length:198
Number of Molecules:1
Biological Source:Streptococcus agalactiae
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*AP*CP*TP*TP*TP*AP*T)-3')
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:Synthetic DNA
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*AP*TP*AP*AP*AP*GP*TP*AP*TP*AP*GP*TP*GP*TP*GP*(TS6))-3')
Chain IDs:C
Chain Length:16
Number of Molecules:1
Biological Source:Synthetic DNA
Primary Citation
Structural basis of a histidine-DNA nicking/joining mechanism for gene transfer and promiscuous spread of antibiotic resistance.
Proc. Natl. Acad. Sci. U.S.A. 114 E6526 E6535 (2017)
PMID: 28739894 DOI: 10.1073/pnas.1702971114

Abstact

Relaxases are metal-dependent nucleases that break and join DNA for the initiation and completion of conjugative bacterial gene transfer. Conjugation is the main process through which antibiotic resistance spreads among bacteria, with multidrug-resistant staphylococci and streptococci infections posing major threats to human health. The MOBV family of relaxases accounts for approximately 85% of all relaxases found in Staphylococcus aureus isolates. Here, we present six structures of the MOBV relaxase MobM from the promiscuous plasmid pMV158 in complex with several origin of transfer DNA fragments. A combined structural, biochemical, and computational approach reveals that MobM follows a previously uncharacterized histidine/metal-dependent DNA processing mechanism, which involves the formation of a covalent phosphoramidate histidine-DNA adduct for cell-to-cell transfer. We discuss how the chemical features of the high-energy phosphorus-nitrogen bond shape the dominant position of MOBV histidine relaxases among small promiscuous plasmids and their preference toward Gram-positive bacteria.

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