4LNU image
Deposition Date 2013-07-12
Release Date 2014-12-03
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4LNU
Title:
Nucleotide-free kinesin motor domain in complex with tubulin and a DARPin
Biological Source:
Source Organism:
Artificial gene (Taxon ID: 32630)
Homo sapiens (Taxon ID: 9606)
Ovis aries (Taxon ID: 9940)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.19 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha chain
Chain IDs:A
Chain Length:451
Number of Molecules:1
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Chain IDs:B
Chain Length:445
Number of Molecules:1
Biological Source:Ovis aries
Polymer Type:polypeptide(L)
Molecule:Designed ankyrin repeat protein (DARPIN) D1
Chain IDs:C (auth: D)
Chain Length:169
Number of Molecules:1
Biological Source:Artificial gene
Polymer Type:polypeptide(L)
Molecule:Kinesin-1 heavy chain
Gene (Uniprot):KIF5B
Mutations:C7S, C65A, C168A, C174S, C294A
Chain IDs:D (auth: K)
Chain Length:325
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
The structure of apo-kinesin bound to tubulin links the nucleotide cycle to movement
Nat Commun 5 5364 5364 (2014)
PMID: 25395082 DOI: 10.1038/ncomms6364

Abstact

Kinesin-1 is a dimeric ATP-dependent motor protein that moves towards microtubules (+) ends. This movement is driven by two conformations (docked and undocked) of the two motor domains carboxy-terminal peptides (named neck linkers), in correlation with the nucleotide bound to each motor domain. Despite extensive data on kinesin-1, the structural connection between its nucleotide cycle and movement has remained elusive, mostly because the structure of the critical tubulin-bound apo-kinesin state was unknown. Here we report the 2.2 Å structure of this complex. From its comparison with detached kinesin-ADP and tubulin-bound kinesin-ATP, we identify three kinesin motor subdomains that move rigidly along the nucleotide cycle. Our data reveal how these subdomains reorient on binding to tubulin and when ATP binds, leading respectively to ADP release and to neck linker docking. These results establish a framework for understanding the transformation of chemical energy into mechanical work by (+) end-directed kinesins.

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Primary Citation of related structures