4LDO image
Entry Detail
PDB ID:
4LDO
Title:
Structure of beta2 adrenoceptor bound to adrenaline and an engineered nanobody
Biological Source:
PDB Version:
Deposition Date:
2013-06-24
Release Date:
2013-09-25
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Lysozyme, Beta-2 adrenergic receptor
Mutations:C918T, C962A, M1096T, M1098T, N1157E, C1265A
Chain IDs:A
Chain Length:469
Number of Molecules:1
Biological Source:Enterobacteria phage T4, Homo sapiens
Polymer Type:polypeptide(L)
Description:Camelid Antibody Fragment
Chain IDs:B
Chain Length:120
Number of Molecules:1
Biological Source:Lama glama
Primary Citation
Adrenaline-activated structure of beta 2-adrenoceptor stabilized by an engineered nanobody.
Nature 502 575 579 (2013)
PMID: 24056936 DOI: 10.1038/nature12572

Abstact

G-protein-coupled receptors (GPCRs) are integral membrane proteins that have an essential role in human physiology, yet the molecular processes through which they bind to their endogenous agonists and activate effector proteins remain poorly understood. So far, it has not been possible to capture an active-state GPCR bound to its native neurotransmitter. Crystal structures of agonist-bound GPCRs have relied on the use of either exceptionally high-affinity agonists or receptor stabilization by mutagenesis. Many natural agonists such as adrenaline, which activates the β2-adrenoceptor (β2AR), bind with relatively low affinity, and they are often chemically unstable. Using directed evolution, we engineered a high-affinity camelid antibody fragment that stabilizes the active state of the β2AR, and used this to obtain crystal structures of the activated receptor bound to multiple ligands. Here we present structures of the active-state human β2AR bound to three chemically distinct agonists: the ultrahigh-affinity agonist BI167107, the high-affinity catecholamine agonist hydroxybenzyl isoproterenol, and the low-affinity endogenous agonist adrenaline. The crystal structures reveal a highly conserved overall ligand recognition and activation mode despite diverse ligand chemical structures and affinities that range from 100 nM to ∼80 pM. Overall, the adrenaline-bound receptor structure is similar to the others, but it has substantial rearrangements in extracellular loop three and the extracellular tip of transmembrane helix 6. These structures also reveal a water-mediated hydrogen bond between two conserved tyrosines, which appears to stabilize the active state of the β2AR and related GPCRs.

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