4L9O image
Deposition Date 2013-06-18
Release Date 2013-10-02
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4L9O
Title:
Crystal Structure of the Sec13-Sec16 blade-inserted complex from Pichia pastoris
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sec16,Protein transport protein SEC13
Gene (Uniprot):SEC13, SEC16
Chain IDs:A, B
Chain Length:349
Number of Molecules:2
Biological Source:Komagataella pastoris, Komagataella phaffii (strain GS115 / ATCC 20864)
Primary Citation
Sec16 influences transitional ER sites by regulating rather than organizing COPII.
Mol Biol Cell 24 3406 3419 (2013)
PMID: 24006484 DOI: 10.1091/mbc.E13-04-0185

Abstact

During the budding of coat protein complex II (COPII) vesicles from transitional endoplasmic reticulum (tER) sites, Sec16 has been proposed to play two distinct roles: negatively regulating COPII turnover and organizing COPII assembly at tER sites. We tested these ideas using the yeast Pichia pastoris. Redistribution of Sec16 to the cytosol accelerates tER dynamics, supporting a negative regulatory role for Sec16. To evaluate a possible COPII organization role, we dissected the functional regions of Sec16. The central conserved domain, which had been implicated in coordinating COPII assembly, is actually dispensable for normal tER structure. An upstream conserved region (UCR) localizes Sec16 to tER sites. The UCR binds COPII components, and removal of COPII from tER sites also removes Sec16, indicating that COPII recruits Sec16 rather than the other way around. We propose that Sec16 does not in fact organize COPII. Instead, regulation of COPII turnover can account for the influence of Sec16 on tER sites.

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