4L37 image
Deposition Date 2013-06-05
Release Date 2013-12-04
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4L37
Keywords:
Title:
SP2-SP3 - a complex of two storage proteins from Bombyx mori hemolymph
Biological Source:
Source Organism:
Bombyx mori (Taxon ID: 7091)
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.22
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 63 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Silkworm storage protein
Gene (Uniprot):sp3
Chain IDs:A
Chain Length:680
Number of Molecules:1
Biological Source:Bombyx mori
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Arylphorin
Gene (Uniprot):733005
Chain IDs:B
Chain Length:687
Number of Molecules:1
Biological Source:Bombyx mori
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN B ASN GLYCOSYLATION SITE
Primary Citation
Crystallographic identification of an unexpected protein complex in silkworm haemolymph.
Acta Crystallogr.,Sect.D 69 2353 2364 (2013)
PMID: 24311577 DOI: 10.1107/S0907444913021823

Abstact

The first crystal structure of a complex formed by two storage proteins, SP2 and SP3, isolated from their natural source, mulberry silkworm (Bombyx mori L.) haemolymph, has been determined. The structure was solved by molecular replacement using arylphorin, a protein rich in aromatic amino-acid residues, from oak silkworm as the initial model. The quality of the electron-density maps obtained from the X-ray diffraction experiment allowed the authors to detect that the investigated crystal structure was composed of two different arylphorins: SP2 and SP3. This discovery was confirmed by N-terminal sequencing. SP2 has been extensively studied previously, whereas only a few reports on SP3 are available. However, to date no structural studies have been reported for these proteins. These studies revealed that SP2 and SP3 exist in the silkworm body as a heterohexamer formed by one SP2 trimer and one SP3 trimer. The overall fold, consisting of three haemocyanin-like subdomains, of SP2 and SP3 is similar. Both proteins contain a conserved N-glycosylation motif in their structures.

Legend

Protein

Chemical

Disease

Primary Citation of related structures