4L2H image
Deposition Date 2013-06-04
Release Date 2013-07-24
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4L2H
Keywords:
Title:
Structure of a catalytically inactive PARG in complex with a poly-ADP-ribose fragment
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.46 Å
R-Value Free:
0.17
R-Value Work:
0.13
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Poly(ADP-ribose) glycohydrolase
Mutations:E256Q
Chain IDs:A
Chain Length:477
Number of Molecules:1
Biological Source:Tetrahymena thermophila
Ligand Molecules
Primary Citation
Visualization of poly(ADP-ribose) bound to PARG reveals inherent balance between exo- and endo-glycohydrolase activities.
Nat Commun 4 2164 2164 (2013)
PMID: 23917065 DOI: 10.1038/ncomms3164

Abstact

Poly-ADP-ribosylation is a post-translational modification that regulates processes involved in genome stability. Breakdown of the poly(ADP-ribose) (PAR) polymer is catalysed by poly(ADP-ribose) glycohydrolase (PARG), whose endo-glycohydrolase activity generates PAR fragments. Here we present the crystal structure of PARG incorporating the PAR substrate. The two terminal ADP-ribose units of the polymeric substrate are bound in exo-mode. Biochemical and modelling studies reveal that PARG acts predominantly as an exo-glycohydrolase. This preference is linked to Phe902 (human numbering), which is responsible for low-affinity binding of the substrate in endo-mode. Our data reveal the mechanism of poly-ADP-ribosylation reversal, with ADP-ribose as the dominant product, and suggest that the release of apoptotic PAR fragments occurs at unusual PAR/PARG ratios.

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Primary Citation of related structures