4L29 image
Deposition Date 2013-06-04
Release Date 2013-12-25
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4L29
Keywords:
Title:
Structure of wtMHC class I with NY-ESO1 double mutant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.09 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:HLA class I histocompatibility antigen, A-2 alpha chain
Chain IDs:A, D (auth: C), G (auth: E), J (auth: G), M (auth: I), P (auth: K), S (auth: M), V (auth: O), Y (auth: Q), BA (auth: S), EA (auth: U), HA (auth: W), KA (auth: Y), NA (auth: a)
Chain Length:276
Number of Molecules:14
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Beta-2-microglobulin
Gene (Uniprot):B2M
Chain IDs:B, E (auth: D), H (auth: F), K (auth: H), N (auth: J), Q (auth: L), T (auth: N), W (auth: P), Z (auth: R), CA (auth: T), FA (auth: V), IA (auth: X), LA (auth: Z), OA (auth: b)
Chain Length:100
Number of Molecules:14
Biological Source:Homo sapiens
Primary Citation
Class I Major Histocompatibility Complex, the Trojan Horse for Secretion of Amyloidogenic beta 2-Microglobulin.
J.Biol.Chem. 289 3318 3327 (2014)
PMID: 24338476 DOI: 10.1074/jbc.M113.524157

Abstact

To form extracellular aggregates, amyloidogenic proteins bypass the intracellular quality control, which normally targets unfolded/aggregated polypeptides. Human D76N β2-microglobulin (β2m) variant is the prototype of unstable and amyloidogenic protein that forms abundant extracellular fibrillar deposits. Here we focus on the role of the class I major histocompatibility complex (MHCI) in the intracellular stabilization of D76N β2m. Using biophysical and structural approaches, we show that the MHCI containing D76N β2m (MHCI76) displays stability, dissociation patterns, and crystal structure comparable with those of the MHCI with wild type β2m. Conversely, limited proteolysis experiments show a reduced protease susceptibility for D76N β2m within the MHCI76 as compared with the free variant, suggesting that the MHCI has a chaperone-like activity in preventing D76N β2m degradation within the cell. Accordingly, D76N β2m is normally assembled in the MHCI and circulates as free plasma species in a transgenic mouse model.

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Primary Citation of related structures