4L1G image
Deposition Date 2013-06-03
Release Date 2014-06-04
Last Version Date 2023-12-06
Entry Detail
PDB ID:
4L1G
Keywords:
Title:
Crystal structure of the Bc1960 peptidoglycan N-acetylglucosamine deacetylase from Bacillus cereus
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.34 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peptidoglycan N-acetylglucosamine deacetylase
Gene (Uniprot):BC_1960
Chain IDs:A, B, C, D
Chain Length:273
Number of Molecules:4
Biological Source:Bacillus cereus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PXU A PRO 2-HYDROXY-L-PROLINE
Primary Citation
Unusual alpha-Carbon Hydroxylation of Proline Promotes Active-Site Maturation.
J.Am.Chem.Soc. 139 5330 5337 (2017)
PMID: 28333455 DOI: 10.1021/jacs.6b12209

Abstact

The full extent of proline (Pro) hydroxylation has yet to be established, as it is largely unexplored in bacteria. We describe here a so far unknown Pro hydroxylation activity which occurs in active sites of polysaccharide deacetylases (PDAs) from bacterial pathogens, modifying the protein backbone at the Cα atom of a Pro residue to produce 2-hydroxyproline (2-Hyp). This process modifies with high specificity a conserved Pro, shares with the deacetylation reaction the same active site and one catalytic residue, and utilizes molecular oxygen as source for the hydroxyl group oxygen of 2-Hyp. By providing additional hydrogen-bonding capacity, the Pro→2-Hyp conversion alters the active site and enhances significantly deacetylase activity, probably by creating a more favorable environment for transition-state stabilization. Our results classify this process as an active-site "maturation", which is highly atypical in being a protein backbone-modifying activity, rather than a side-chain-modifying one.

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