4L19 image
Entry Detail
PDB ID:
4L19
Title:
Matrix metalloproteinase-13 complexed with selective inhibitor compound Q1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2013-06-02
Release Date:
2014-12-10
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.19
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Collagenase 3
Chain IDs:A, B
Chain Length:171
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Characterization of selective exosite-binding inhibitors of matrix metalloproteinase 13 that prevent articular cartilage degradation in vitro.
J.Med.Chem. 57 9598 9611 (2014)
PMID: 25330343 DOI: 10.1021/jm501284e

Abstact

Matrix metalloproteinase 13 (MMP-13) has been shown to be the main collagenase responsible for degradation of articular cartilage during osteoarthritis and therefore represents a target for drug development. As a result of high-throughput screening and structure-activity relationship studies, we identified a novel, highly selective class of MMP-13 inhibitors (compounds 1 (Q), 2 (Q1), and 3 (Q2)). Mechanistic characterization revealed a noncompetitive nature of these inhibitors with binding constants in the low micromolar range. Crystallographic analyses revealed two binding modes for compound 2 in the MMP-13 S1' subsite and in an S1/S2* subsite. Type II collagen- and cartilage-protective effects exhibited by compounds 1, 2, and 3 suggested that these compounds might be efficacious in future in vivo studies. Finally, these compounds were also highly selective when tested against a panel of 30 proteases, which, in combination with a good CYP inhibition profile, suggested low off-target toxicity and drug-drug interactions in humans.

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