4L02 image
Deposition Date 2013-05-30
Release Date 2013-07-24
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4L02
Title:
Crystal Structure of SphK1 with inhibitor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.75 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sphingosine kinase 1
Gene (Uniprot):SPHK1
Chain IDs:A, B, C
Chain Length:384
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure guided design of a series of sphingosine kinase (SphK) inhibitors.
Bioorg.Med.Chem.Lett. 23 4608 4616 (2013)
PMID: 23845219 DOI: 10.1016/j.bmcl.2013.06.030

Abstact

Sphingosine-1-phosphate (S1P) signaling plays a vital role in mitogenesis, cell migration and angiogenesis. Sphingosine kinases (SphKs) catalyze a key step in sphingomyelin metabolism that leads to the production of S1P. There are two isoforms of SphK and observations made with SphK deficient mice show the two isoforms can compensate for each other's loss. Thus, inhibition of both isoforms is likely required to block SphK dependent angiogenesis. A structure based approach was used to design and synthesize a series of SphK inhibitors resulting in the identification of the first potent inhibitors of both isoforms of human SphK. Additionally, to our knowledge, this series of inhibitors contains the only sufficiently potent inhibitors of murine SphK1 with suitable physico-chemical properties to pharmacologically interrogate the role of SphK1 in rodent models and to reproduce the phenotype of SphK1 (-/-) mice.

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Chemical

Disease

Primary Citation of related structures
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